Path not setting


I'm trying to set a new system variable by installing a console application(in MFC). It's working -- I'm seeing the new variable appear in:
HKEY_LOCAL_MACHINESYSTEMCurrentControlSetControlSession ManagerEnvironment

But when i am running my console Applicaton, its not running properly. When I issue a SET command, variables are not there. If I close the Cmd window and reopen it, also it is not there.
Can any one tell me the root cause of this problem.
I am using Microsoft Windows Server 2003 Enterprise Edition machine. This is happening only on Windows Server 2003 Enterprise Edition machine.

Thanks in Advance
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