I am trying to do an HMM alignment, and I am talking the commands straight out of the tutorial, and I am getting errors. It is funny, because I can do other tutorials, its not like the whole thing is broken.
This is what happens:
hmmmodel = gethmmprof('PF00002')
is the command.
error:
??? Error using ==> pfamhmmread at 70
Input is not a valid PFAM file.
Error in ==> getsangerdata at 180
out = pfamhmmread(s);
Error in ==> gethmmprof at 82
model = getsangerdata(accessnum,'database','hmm',varargin{:});
Does anyone know what is going on?
Thanks.
Mark