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    <title>'bioinformatics toolbox- command from turoial won't work' Thread RSS Feed</title>
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    <pubDate>Thu, 09 Feb 2012 10:12:41 -0800</pubDate>
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      <title>bioinformatics toolbox- command from turoial won't work</title>
      <link>http://www.programmersheaven.com/mb/ctocplusplustomatlab/409262/409262/bioinformatics-toolbox--command-from-turoial-wont-work/</link>
      <description>I am trying to do an HMM alignment, and I am talking the commands straight out of the tutorial, and I am getting errors. It is funny, because I can do other tutorials, its not like the whole thing is broken.&lt;br /&gt;
This is what happens:&lt;br /&gt;
&lt;br /&gt;
hmmmodel  = gethmmprof('PF00002')&lt;br /&gt;
&lt;br /&gt;
is the command.&lt;br /&gt;
&lt;br /&gt;
error:&lt;br /&gt;
??? Error using ==&amp;gt; pfamhmmread at 70&lt;br /&gt;
Input is not a valid PFAM file.&lt;br /&gt;
&lt;br /&gt;
Error in ==&amp;gt; getsangerdata at 180&lt;br /&gt;
        out = pfamhmmread(s);&lt;br /&gt;
&lt;br /&gt;
Error in ==&amp;gt; gethmmprof at 82&lt;br /&gt;
        model = getsangerdata(accessnum,'database','hmm',varargin{
:});&lt;br /&gt;
 &lt;br /&gt;
Does anyone know what is going on? &lt;br /&gt;
Thanks.&lt;br /&gt;
Mark&lt;br /&gt;</description>
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      <pubDate>Fri, 13 Nov 2009 14:27:57 -0800</pubDate>
      <category>Matlab</category>
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